I use a modified version of the script posted here:
-- Script to link DEVONthink file and Bookends reference along with custom metadata
-- Kyle Eggleton April 2019, modified December 2021 (guylaine)
tell application "Bookends"
tell front library window
-- Get selected publication
set theRefs to selected publication items
set theRefsNo to count of theRefs
set theRef to first item of theRefs
-- Error messages
if theRefsNo is greater than 1 then error "Select only one item"
if theRefs is {} then error "Nothing selected in Bookends"
-- Get properties of selected reference
set theID to id of theRef
set theDOI to doi of theRef
set theAbstract to abstract of theRef
set theAuthor to authors of theRef
set theTitle to title of theRef
set thePubDate to publication date string of theRef
set theISBN to isbn of theRef
set theRating to rating of theRef
set theKeywords to keyword names of theRef
set {TID, AppleScript's text item delimiters} to {AppleScript's text item delimiters, ","}
set theKeywords to theKeywords as text
set AppleScript's text item delimiters to TID
set theAttachments to attachments of theRef
set theJournal to journal of theRef
set theFormattedReference to format theRef using "Vancouver.fmt" --Change to theformat in Bookends that you want
-- Only set metadata fields for PDF if there is an attachment
if theAttachments is equal to "" then error "There is no file attached to the Bookends reference"
if theAttachments is not equal to "" then
set theFile to the first attachment item of theRef
set thePath to the path of theFile
if theFile is "" then error "The file is missing from the Bookends reference"
-- Set the metadata fields for PDF. Need to install exiftool (https://www.sno.phy.queensu.ca/~phil/exiftool/install.html)
end if
end tell
end tell
-- Set URL to Bookends and custom metadata in DevonThink. Need to create custom meta data fields for Abstract, Citation, Reference, Published and Bookends URL
tell application id "DNtp"
set theURL to ("bookends://sonnysoftware.com/" & theID) as text
set theRecord to the content record of think window 1
if theRecord is {} then error "Nothing selected in DEVONThink Pro"
set rating of theRecord to theRating as integer
add custom meta data theURL for "beurl" to theRecord
add custom meta data theAbstract for "abstract" to theRecord
add custom meta data thePubDate for "published" to theRecord
add custom meta data theISBN for "is?n" to theRecord
add custom meta data theDOI for "doi" to theRecord
add custom meta data theFormattedReference for "reference" to theRecord
set theLink to reference URL of theRecord
do shell script "/usr/local/bin/exiftool -title=" & quoted form of theTitle & " -author=" & quoted form of theAuthor & " -sep \", \" -keywords='" & theKeywords & "' -subject=" & quoted form of theJournal & " -overwrite_original " & quoted form of thePath
end tell
-- Set URL to DEVONThink in Bookends (using user4 field)
tell application "Bookends"
tell front library window
set user4 of publication item id theID to (theLink & "?reveal=1")
end tell
end tell
It does much more than just link (copies basically all the info from Bookends to DT so you can have more than the file name in DT), but only processes one file at a time, which needs to be selected in both Bookends and DT when you run it. If all you want is linking, the script posted by @cgrunenberg is the way to go.