Hi,
I have an issue with identical file names (but not duplicate files). In the Mac Finder, if a file with the same filename is placed/ copied in the same folder, it automatically adds an “index”:
But duplicating files in DEVONthink adds an index too. Maybe these PDF documents have a title, see Info > Properties inspector, and then this title would be used in case of files duplicated in the Finder?
Yes. AFAICT, DT does rename the files, i.e. their names on disk change. But the displayed name does not, since in DT these two things are separate (like in Finder, which uses localized names for many objects and not the real object names, which are always English).