On testing, I’ll take at least some of my effusive remarks back.
Yes, you can add a file (or a folder of files), using the Finder, into an indexed folder and, hey presto, there it is in the right place in DT3. Huzzah, etc.
Syncing via a Dropbox sync store makes the files appear on the other machine, and syncs their changes across the machines. Huzzah. However in DTTG, although files you created in the macOS Finder show up, as you’d expect, files created in DTTG appear in DT3 but not in the Finder: they have to be moved into the Finder folder manually (“move to external folder”), which is weird.
Also, move any indexed file or folder in DT3 to the “trash” and there the correspondence between DT3 and Finder ends. The file or folder is not moved to the Finder trash (as it is in Keep It), just to the DT3 trash. But, if you empty the DT3 trash, it is put in the Finder trash. So, after you’ve “trashed” it, you could peek in the Finder folder and assume that it’s available in that location in DT3, but it isn’t.
So indexing and Finder-mirroring is still in a sort of half-and-half state - an odd business, even with the new ‘Finder-moving’ (and ‘Finder-moving across synced locations’) behaviours.
This is unnerving, especially as I notice that with the new DT3, Scrivener projects seem to sync OK between machines (via Dropbox sync store), inside an indexed database (large huzzahs). I recall I just could not get them to sync in DTPO2. (But, I’ve yet to see whether they’ll sync with an imported database…)
I used to shy away from indexing with DTPO2, simply because it was so easy to move an item and forget that you weren’t moving it in the Finder as well. Now in DT3, the correspondence to the Finder is almost there, but not in the case of deleting an item, or with files made on mobile. No idea why.
Perhaps I’ll use DT3 only for imported (non-indexed) databases, and use Keep It for data that I’d still like to have that one-to-one correspondence with the Finder (so much better visually than ferreting around with Finder windows). As time goes on I’ll see which seems to be the one I’ll use most. I’ll probably use both, even if I’d rather just use one.
I know I mention Keep It a lot, but this is because the programs are without doubt very similar. Keep It does a lot of what I want and how I want to do it, but I’d so prefer to use DT3, if it didn’t have these peculiarities with indexing, because with DT3 I can use Dropbox (with selective sync); plus, DT3 has many more other sophisticated features that Keep It sorely lacks.