Adobe’s Portable Document Format (PDF) was created to be viewable in all common operating systems. That makes sharing documents among colleagues using different computer platforms and operating systems a simple matter.
If that’s your objective, I understand why you wish to convert your existing documents to PDF.
Is that your objective?
The PDF file format is bloated compared to plain or rich text files. It’s difficult to edit PDF documents. Capturing blocks of text to extract excerpts for use in another document can be a hassle. Adobe’s text note annotations are limited to plain text, are not searchable in OS X’s PDFKit (used by DEVONthink) and IMHO are ugly. Those are reasons why I try to minimize the number of PDFs in my research databases. 
My main database that I use for research and draft writing contains many thousands of scientific papers and other articles captured from the Web as rich text. The file size of that database is 4.8 GB. If I had captured all of those references as PDF, the file size would exceed 50 GB, and (because of extraneous text on many pages if captured as PDF) the efficiency of searches and of the AI assistants such as Classify and See Also would be significantly reduced.
In that database, comprising about 30,000 documents, only 7% are PDFs (and only 1% are WebArchive, which is more bloated than PDF). For those occasions when I need to share documents with others who don’t use Macs, I’ll send them a version printed as PDF.
I’ve been lovingly building that database of references since 2002. I’m constantly adding new content and pruning obsolete or less useful content.
By contrast, my financial database consists almost entirely of PDFs, including scanned and OCRed documents. This is a smaller database in total number of documents (but relatively larger in file size), it is highly organized by groups and I do few searches and rarely use the AI assistants.
Still another database consists of methodological documents related to environmental sampling techniques, chemical analytical methodologies, quality assurance methods, data evaluation techniques, risk analysis and cost-benefit methodologies. The contents come largely from U.S. and EU governmental agencies and more than 80% are PDF format and are long documents, with a bulk of almost 16 GB. I find it useful, but much less efficient for searching and AI use than my main research database. That’s not because of the file format but document length, often including many topics within the same document.
No, I didn’t answer your question. But I’m curious as to why you want to move to PDFs as a primary document type.