I like to capture web pages as markdown to facilitate any required cleanup. I then convert them to PDF for highlighting and the rest of my normal info PKM workflow.
An advantage of this method is that I can use some simple HTML to include videos in the markdown as they appeared in the original article.
Unfortunately the resulting PDFs do not include links to hosted videos (youtube, vimeo). This seems like a limitation of the PDF format, though it does seem to support embedded videos and direct links to mp4s, etc.
Have I got this right? Does anyone have a workaround or other recommendation?